Bioimage Analyst at CFIM (Core Facility for Integrated Microscopy)

The Faculty of Health Sciences, University of Copenhagen

Applications are invited for a position as Bioimage Analyst at the Core Facility for Integrated Microscopy (CFIM), the Faculty of Health Sciences, University of Copenhagen, to commence on 1 February 2021 or as soon as possible.

CFIM  was inaugurated in August 2010 and has serviced more than 1800 users with access to state of the art light- and electron microscopes.

The successful applicant will be part of a highly international team composed of light and electron microscopy application specialists and laboratory technicians. CFIM is located in the center of Copenhagen, at the North Campus of the University and has the mission of giving highest-level user service provision in advanced microscopy technologies to internal and external users from a broad range of disciplines within life sciences.

The successful applicant will be responsible for:

•     Introducing, training and supporting users on data analysis workflows

  • Participating in experimental design meetings with facility users and other staff members in order to define optimal image acquisition and analysis strategies
  • Creating project-based data analysis workflow solutions
  • Development and implementation of new analysis tools 
  • Defining and developing the hardware and software framework to support CFIM services
  • Developing data management and storage solutions
  • Staying up to date with the latest developments in image analysis methods and technologies
  • Networking with the international image analysis community
  • Helping with the organization and teaching in CFIM courses

The successful applicant should have:

  • MSc. or PhD. degree in relevant scientific areas
  • Relevant experience in biological image analysis, programming of image analysis software, experience with batch processing of microscopy data and automation of image acquisition
  • Experience in machine learning and deep learning
  • Strong programming skills in ImageJ macro, Python, Matlab, R and Java
  • Strong motivation to support and train users with a problem-solving mindset
  • Excellent social, communication and organization skills
  • Fluency in English
  • Interest in image formation (microscopy) and life sciences
  • Previous experience with light microscopy applications will be considered an advantage

Salary and employment terms

The position as Special Consultant are a fulltime position with permanent employment and are in accordance with the agreement between the Ministry of Finance and AC (Danish Confederation of Professional Associations). Salary and other terms and conditions of appointment are set according to the AC-agreement for Special Consultants. Salary supplements may be negotiated to match individual qualifications.

For additional information about the position, please contact Clara Prats, e-mail:


Your application must be submitted electronically by clicking “Apply now” below or via this advertisement found on

Deadline for applications is 9 December 2020.

Interviews will be held as soon as possible after application deadline.

We wish to reflect the diversity of society and encourage all qualified candidates to reply regardless of personal background.


Københavns Universitet giver sine knap 10.000 medarbejdere muligheder for at udnytte deres talent fuldt ud i et ambitiøst, uformelt miljø. Vi sikrer traditionsrige og moderne rammer om uddannelser og fri forskning på højt internationalt niveau. Vi søger svar og løsninger på fælles problemer og gør ny viden tilgængelig og nyttig for andre.


Clara Prats Gavalda


Ansøgningsfrist: 09-12-2020
Ansættelsesdato: 01-02-2021
Arbejdstid: Fuldtid
Afdeling/Sted: Department of Biomedical Sciences

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